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US government shutdown to furlough 41% of health agency workers

If a shutdown occurs, 32,460 HHS employees will be furloughed, suspending key public health activities including research and contractor oversight, officials said.

  • Congress must pass a funding bill by Tuesday to prevent a partial federal government shutdown affecting health agencies.
  • The looming shutdown follows unresolved budget negotiations amid threats from President Trump’s administration to permanently remove some agency workers if funding lapses.
  • Over the weekend, a contingency staffing plan indicated that 41% of the 79,717 employees within the federal health agency would face furloughs, including 64% of staff at the CDC and more than 75% at the NIH.
  • The plan indicates that the CDC's ability to communicate health information to the public will be limited, the Centers for Medicare & Medicaid Services will lose the capacity to monitor key contractors, and the NIH will restrict new patient admissions to medically necessary cases only.
  • These furloughs could suspend critical public health functions, suggesting significant disruptions in disease prevention, research, and federal employee status amid the shutdown threat.
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CNBC broke the news in United States on Monday, September 29, 2025.
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